The focus is on practical skills in using simple electronics to reinforce application of bio-inspired ideas. Many experiments will help working towards thesis projects. Controlling a servo motor in a bio-robotic environment Remote Trigger Understanding the kinematics of a robotic upper arm Remote Trigger Understanding the kinematics of a robotic upper arm - Interactive Remote Trigger Light sensing process in a neural circuit Remote Trigger Pattern recognition in a hardware neural network Remote Trigger Mechanism behind the movement of a Walker robot with 4 neurons Remote Trigger Interaction study with Neuronal Circuits Constructing a six core brain like circuit Remote Trigger Virtual Biophysics Lab Remote Trigger This lab will provide an online experience via remote equipment to study biophysics and biophysical techniques.
Filtering and removal of artifacts in Biosignals Point processes and models Analysis of Biosignals activity and artifacts Power spectrum calculations using different windows Study the changes in the PSDs by varying window width Temporal structure in EEG Motor unit firing pattern Modeling network activity as in biological circuits Modeling synaptic network connectivity Reconstructing Averaged Population Response Biosignal Import and Channel Analysis Time-frequency analysis of Biosignals.
Bioinformatics and Data Science in Biotechnology This lab is a connection of bioinformatics experiments performed using R programming. Neurophysiology Virtual Lab pilot Neurophysiology is the study of nervous system function. Neuron Simulation Virtual Lab pilot This lab uses a graphical web-based Neuron simulator and models a section of excitable neuronal membrane using the Hodgkin-Huxley equations.
Modeling resting potentials in Neurons Modeling action potentials Modeling the delayed rectifier Potassium channels Modeling the sodium ion channel and its effects on neural signaling Current Clamp protocol Voltage Clamp Protocol Understanding Frequency-Current relationship Understanding first spike latency - current relationship Voltage-Current VI plot Effects of pharmacological blockers on action potential.
Biochemistry Virtual Lab I Biochemistry is the study of the chemical processes in living organisms. Biochemistry Virtual Lab II Biochemistry Virtual Lab II deals with topics like enzymology, purification of plant pigments and natural products as well as estimation of iodine value and saponification value of fats and oils.
Population ecology Virtual Lab I A population is a collection of individuals of the same species that live together in a region. Population ecology Virtual Lab II Population ecology is the study of populations especially population abundance and how they change over time.
Immunology Virtual Lab I The branch of biomedicine concerned with the structure and function of the immune system, innate and acquired immunity, the bodily distinction of self from no self, and laboratory techniques involving the interaction of antigens with specific antibodies.
Immunology Virtual Lab II The branch of biomedicine concerned with the structure and function of the immune system, innate and acquired immunity, the bodily distinction of self from no self, and laboratory techniques involving the interaction of antigens with specific antibodies. Microbiology Virtual Lab I The study of microorganisms, which are unicellular or cell-cluster microscopic organisms. Microbiology Virtual Lab II To study the biochemical properties of microorganisms, the various techniques employed in cultivation of fungi and viruses along with the molecular level analysis of microbial genome.
Cell biology Virtual Lab I Cell biology is an exciting and dynamic area that helps discover the fascinating world of cells. Cell biology Virtual Lab II Cell biology is an exciting and dynamic area that helps discover the fascinating world of cells.
Bioinformatics Virtual Lab I Bioinformatics is a field which using techniques of informatics to gather, store, analyse and integrate biological data. I hope soon to move these software listings webpages to a Github archive, and invite others to help contribute to them and maintain them.
In the meantime, I may not be able to devote time to searching for new programs, so their authors are begged to please! That form will be found at the "Submitting" link below. If you are upset that your program is not included, but it's too much trouble for you to fill out the submission form, then I will not listen to you. If anyone else wants to help with this, let me know.
Owing to past NSF support of these pages, I am required to note that any opinions, findings, and conclusions or recommendations expressed in this material are those of the author and do not necessarily reflect the views of the National Science Foundation NSF supported these pages from Notices added in compliance with University of Washington requirements for web sites hosted at the University: Privacy Terms.
By computer. Data types. Web servers. The sequence characters may contain optional spaces e. To check whether all characters are valid before writing, the user can call Alignment. Since scikit-bio supports both - and.
Each chunk will be separated by a single space. The sequence will always appear on a single line sequential format. It will not be wrapped across multiple lines. Sequences are chunked in this manner for improved readability, and because most example PHYLIP files are chunked in a similar way e. Notice that the character sequences were split into two chunks, and that each sequence appears on a single line sequential format.
Also note that each sequence ID is padded with spaces to 10 characters in order to produce a fixed width column. One way to work around this is to update the IDs to be shorter.
The recommended way of accomplishing this is via Alignment. For example, to remap each of the IDs to integer-based IDs:. Site Sequence collections and alignments skbio. Note scikit-bio will write the PHYLIP format header without preceding spaces, and with only a single space between n and m.
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